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NOTE: All the binary distributions at this site were compiled under RedHat LINUX version 7.1, kernel 2.2.2-2.
All the software available here comes unsupported and with no warranties.
| Software Name |
Readme |
Download
binary |
Description |
Author(s) |
| ANOLEA |
Info |
Linux 2.4.2-2 |
A program to assess the quality of a three - dimensional protein structure. It uses a
statistical potential at the atomic level and gives an energy profile as ouput. |
Melo, F.
Feytmans, E. |
| Plot3D |
info |
Linux 2.4.2-2 |
A program to quickly generate MatLab input files and the script to make a nice encapsulated
postscript 3D plot. An ASCII file containing three dimensional raw data is required as input (three columns, X, Y,
and Z). |
Melo, F. |
| Sup2res |
Info |
Linux 2.4.2-2 |
A program to superpose two equivalent residues in PDB format given a correspondency table
containing the equivalent atom names to be used in the superposition. The program generates a file containing the
superposed residues in PDB format. Also, an additional file containing the total cRMSD after superposition is
written by the program. |
Melo, F. |
| Sup2resList |
Info |
Linux 2.4.2-2 |
A program to superpose a set of equivalent residues in PDB format given a correspondency
table containing the equivalent atom names to be used in the superposition. As the output, a difference table
containing the pairwise cRMSD differences among all residues is generated. Also, a PDB file with all the residues
superposed in 3D is generated. |
Melo, F. |
| Mod2dendro |
Info |
Linux 2.4.2-2 |
A program to produce a nice postscript file with a dendrogram generated by MODELLER. |
Melo, F. |
| GDR |
Info |
Linux 2.4.2-2 |
A program to get the observed distances between all pair of atoms in one or more given
residues in PDB format (standard residues or any ligand). |
Melo, F. |
| GAR |
Info |
Linux 2.4.2-2 |
A program to get the observed values of all possible angles (bonded and non-bonded) between
three atoms in one or more given residues in PDB format (standard residues or any ligand). |
Melo, F. |
| GDAR |
Info |
Linux 2.4.2-2 |
A program to get the observed values of all possible dihedral angles (bonded and non-bonded)
between four atoms in one or more given residues in PDB format (standard residues or any ligand). |
Melo, F. |
| spectrum |
Info |
Linux 2.4.2-2 |
A program to produce automatically and simultaneously a postscript file containing thousands
of spectrum plots for any observed distribution of values. |
Melo, F. |
| histo |
Info |
Linux 2.4.2-2 |
A program to produce automatically and simultaneously a postscript file containing thousands
of histogram plots for any observed distribution of values. |
Melo, F. |
| ASGL |
Info |
Linux 2.4.2-2 |
A program to produce postscript plots. |
Sali, A. |
| cluster |
Info |
Linux 2.4.2-2 |
A program for clustering (cluster) and generation of nice dendrograms (den). |
Kleiweg, P. |
| koh |
Info |
Linux 2.4.2-2 |
A program for the generation and visualization of Kohonen self organizing maps (SOMs). |
Kleiweg, P. |
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