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| Server Name |
Input
format |
Description |
Author(s) |
| ANOLEA |
PDB |
A server to assess the quality of a three - dimensional protein structure. It uses a statistical potential
at the atomic level and gives an energy profile as ouput. Also, the user can choose to have a molecular graphical
output representation of the energy profile. The standalone version of the program is also available. |
Melo, F. and Feytmans, E. |
| dnaMATE |
text file |
Calculation of melting temperature for short DNA sequences (15-30 nts) by five different methods. A consensus melting temperature is given, which is based on the results of a comparative study about the similarities and differences of the existing methods that are available for the calculation of melting temperatures. The standalone version of the program is also available. |
Panjkovich, A., Norambuena, T. and Melo, F. |
| SAGExplore |
text file |
Mapping of SAGE tags against a genomic annotation. Currently, only yeast is available. Xenopus tropicalis and human will be added soon. |
Norambuena, T., Malig, R. and Melo, F. |
| StAR |
text file |
A web server and standalone program for the statistical comparison of several binary classifiers. This server assess the statistical significance of the observed differences between two or more classifiers by means of their ROC (Receiver Operating Characteristic) curves. The statistical comparison relies on a non-parametric test and the area under the ROC curves (AUCs). The server is able to perform the simultaneous pairwise comparison of many binary classifiers. |
Vergara, I.A., Norambuena, T., Ferrada, E., Slater A.W, and Melo, F. |
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